Research output per year
Research output per year
- 1 - 50 out of 91 results
Search results
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2024
A cellulosomal double-dockerin module from Clostridium thermocellum shows distinct structural and cohesin-binding features
Chen, C., Yang, H., Dong, S., You, C., Moraïs, S., Bayer, E. A., Liu, Y. J., Xuan, J., Cui, Q., Mizrahi, I. & Feng, Y., 1 Apr 2024, In: Protein Science. 33, 4, e4937.Research output: Contribution to journal › Article › peer-review
2 Scopus citations -
Cryptic diversity of cellulose-degrading gut bacteria in industrialized humans
Moraïs, S., Winkler, S., Zorea, A., Levin, L., Nagies, F. S. P., Kapust, N., Lamed, E., Artan-Furman, A., Bolam, D. N., Yadav, M. P., Bayer, E. A., Martin, W. F. & Mizrahi, I., 15 Mar 2024, In: Science. 383, 6688, eadj9223.Research output: Contribution to journal › Article › peer-review
12 Scopus citations -
Phylogenomics and genetic analysis of solvent-producing Clostridium species
Jensen, R. O., Schulz, F., Roux, S., Klingeman, D. M., Mitchell, W. P., Udwary, D., Moraïs, S., Reynoso, V., Winkler, J., Nagaraju, S., De Tissera, S., Shapiro, N., Ivanova, N., Reddy, T. B. K., Mizrahi, I., Utturkar, S. M., Bayer, E. A., Woyke, T., Mouncey, N. J. & Jewett, M. C. & 4 others, , 1 Dec 2024, In: Scientific data. 11, 1, 432.Research output: Contribution to journal › Article › peer-review
Open Access2 Scopus citations -
Plasmid-encoded toxin defence mediates mutualistic microbial interactions
Moraïs, S., Mazor, M., Tovar-Herrera, O., Zehavi, T., Zorea, A., Ifrach, M., Bogumil, D., Brandis, A., Walter, J., Elia, N., Gur, E. & Mizrahi, I., 1 Jan 2024, In: Nature Microbiology. 9, 1, p. 108-119 12 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
The underappreciated diversity of bile acid modifications
Mohanty, I., Mannochio-Russo, H., Schweer, J. V., El Abiead, Y., Bittremieux, W., Xing, S., Schmid, R., Zuffa, S., Vasquez, F., Muti, V. B., Zemlin, J., Tovar-Herrera, O. E., Moraïs, S., Desai, D., Amin, S., Koo, I., Turck, C. W., Mizrahi, I., Kris-Etherton, P. M. & Petersen, K. S. & 8 others, , 28 Mar 2024, In: Cell. 187, 7, p. 1801-1818.e20Research output: Contribution to journal › Article › peer-review
Open Access27 Scopus citations -
2023
Carbohydrate Depolymerization by Intricate Cellulosomal Systems
Moraïs, S., Stern, J., Artzi, L., Fontes, C. M. G. A., Bayer, E. A. & Mizrahi, I., 1 Jan 2023, In: Methods in molecular biology (Clifton, N.J.). 2657, p. 53-77 25 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Limb girdle muscular disease caused by HMGCR mutation and statin myopathy treatable with mevalonolactone
Yogev, Y., Shorer, Z., Koifman, A., Wormser, O., Drabkin, M., Halperin, D., Dolgin, V., Proskorovski-Ohayon, R., Hadar, N., Davidov, G., Nudelman, H., Zarivach, R., Shelef, I., Perez, Y. & Birk, O. S., 6 Feb 2023, In: Proceedings of the National Academy of Sciences of the United States of America. 120, 7, e2217831120.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Phylogenetic diversity of core rumen microbiota as described by cryo-ET
Wimmer, B. H., Moraïs, S., Zalk, R., Mizrahi, I. & Medalia, O., 1 Jan 2023, In: MicroLife. 4, uqad010.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
2022
Combinatorial assembly and optimisation of designer cellulosomes: a galactomannan case study
Vanderstraeten, J., da Fonseca, M. J. M., De Groote, P., Grimon, D., Gerstmans, H., Kahn, A., Moraïs, S., Bayer, E. A. & Briers, Y., 1 Dec 2022, In: Biotechnology for Biofuels and Bioproducts. 15, 1, 60.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
FLU-LISA (fluorescence-linked immunosorbent assay): high-throughput antibody profiling using antigen microarrays
Levy, S., Abd Alhadi, M., Azulay, A., Kahana, A., Bujanover, N., Gazit, R., McGargill, M. A., Friedman, L. M. & Hertz, T., 25 Dec 2022, (Accepted/In press) In: Immunology and Cell Biology. 101, 3, p. 231-248 18 p.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Mapping the deformability of natural and designed cellulosomes in solution
Dorival, J., Moraïs, S., Labourel, A., Rozycki, B., Cazade, P. A., Dabin, J., Setter-Lamed, E., Mizrahi, I., Thompson, D., Thureau, A., Bayer, E. A. & Czjzek, M., 1 Dec 2022, In: Biotechnology for Biofuels and Bioproducts. 15, 1, 68.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Metaproteome plasticity sheds light on the ecology of the rumen microbiome and its connection to host traits
Sasson, G., Moraïs, S., Kokou, F., Plate, K., Trautwein-Schult, A., Jami, E., Bayer, E. A., Becher, D. & Mizrahi, I., 1 Nov 2022, In: ISME Journal. 16, 11, p. 2610-2621 12 p.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Nanoscale resolution of microbial fiber degradation in action
Tatlı, M., Moraïs, S., Tovar-Herrera, O. E., Bomble, Y. J., Bayer, E. A., Medalia, O. & Mizrahi, I., 1 May 2022, In: eLife. 11, e76523.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
2021
Structure and substrate recognition by the Ruminococcus bromii amylosome pullulanases
Cockburn, D. W., Kibler, R., Brown, H. A., Duvall, R., Moraïs, S., Bayer, E. & Koropatkin, N. M., 1 Sep 2021, In: Journal of Structural Biology. 213, 3, 107765.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
2020
A real-time PCR for specific detection of the Legionella pneumophila serogroup 1 ST1 complex
ESCMID Study Group for Legionella Infections (ESGLI), 1 Apr 2020, In: Clinical Microbiology and Infection. 26, 4, p. 514.e1-514.e6Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations -
Differential network analysis of multiple human tissue interactomes highlights tissue-selective processes and genetic disorder genes
Basha, O., Argov, C. M., Artzy, R., Zoabi, Y., Hekselman, I., Alfandari, L., Chalifa-Caspi, V., Yeger-Lotem, E. & Yeger-Lotem, E., 1 May 2020, In: Bioinformatics. 36, 9, p. 2821-2828 8 p.Research output: Contribution to journal › Article › peer-review
Open Access25 Scopus citations -
Glycosylation of hyperthermostable designer cellulosome components yields enhanced stability and cellulose hydrolysis
Kahn, A., Moraïs, S., Chung, D., Sarai, N. S., Hengge, N. N., Kahn, A., Himmel, M. E., Bayer, E. A. & Bomble, Y. J., 1 Oct 2020, In: FEBS Journal. 287, 20, p. 4370-4388 19 p.Research output: Contribution to journal › Article › peer-review
Open Access15 Scopus citations -
Glycosylation of N-Hydroxy-Pipecolic Acid Equilibrates between Systemic Acquired Resistance Response and Plant Growth
Cai, J., Jozwiak, A., Holoidovsky, L., Meijler, M. M., Meir, S., Rogachev, I. & Aharoni, A., 29 Dec 2020, In: Molecular Plant. 14, 3, p. 440-455 16 p.Research output: Contribution to journal › Article › peer-review
43 Scopus citations -
Impact of scaffoldin mechanostability on cellulosomal activity
Galera-Prat, A., Vera, A. M., Moraïs, S., Vazana, Y., Bayer, E. A. & Carrión-Vázquez, M., 7 Jul 2020, In: Biomaterials Science. 8, 13, p. 3601-3610 10 p.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Minimalistic cellulosome of the butanologenic bacterium clostridium saccharoperbutylacetonicum
Hevroni, B. L., Moraïs, S., Ben-David, Y., Morag, E. & Bayer, E. A., 1 Mar 2020, In: mBio. 11, 2, e00443-20.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Rapid adaptation for fibre degradation by changes in plasmid stoichiometry within Lactobacillus plantarum at the synthetic community level
Ben-David, Y., Moraïs, S., Bayer, E. A. & Mizrahi, I., 1 Nov 2020, In: Microbial Biotechnology. 13, 6, p. 1748-1764 17 p.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
The mitochondrial protein vdac1 at the crossroads of cancer cell metabolism: The epigenetic link
Amsalem, Z., Arif, T., Shteinfer-Kuzmine, A., Chalifa-Caspi, V. & Shoshan-Barmatz, V., 1 Apr 2020, In: Cancers. 12, 4, 1031.Research output: Contribution to journal › Article › peer-review
Open Access24 Scopus citations -
2019
Aging promotes reorganization of the CD4 T cell landscape toward extreme regulatory and effector phenotypes
Elyahu, Y., Hekselman, I., Eizenberg-Magar, I., Berner, O., Strominger, I., Schiller, M., Mittal, K., Nemirovsky, A., Eremenko, E., Vital, A., Simonovsky, E., Chalifa-Caspi, V., Friedman, N., Yeger-Lotem, E. & Monsonego, A., 21 Aug 2019, In: Science advances. 5, 8, eaaw8330.Research output: Contribution to journal › Article › peer-review
Open Access163 Scopus citations -
Creation of a functional hyperthermostable designer cellulosome
Kahn, A., Moraïs, S., Galanopoulou, A. P., Chung, D., Sarai, N. S., Hengge, N., Hatzinikolaou, D. G., Himmel, M. E., Bomble, Y. J. & Bayer, E. A., 28 Feb 2019, In: Biotechnology for Biofuels. 12, 1, 44.Research output: Contribution to journal › Article › peer-review
Open Access41 Scopus citations -
CSBFinder: Discovery of colinear syntenic blocks across thousands of prokaryotic genomes
Svetlitsky, D., Dagan, T., Chalifa-Caspi, V. & Ziv-Ukelson, M., 15 May 2019, In: Bioinformatics. 35, 10, p. 1634-1643 10 p.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
Hyperuricemia and gout caused by missense mutation in d-lactate dehydrogenase
Drabkin, M., Yogev, Y., Zeller, L., Zarivach, R., Zalk, R., Halperin, D., Wormser, O., Gurevich, E., Landau, D., Kadir, R., Perez, Y. & Birk, O. S., 2 Dec 2019, In: Journal of Clinical Investigation. 129, 12, p. 5163-5168 6 p.Research output: Contribution to journal › Article › peer-review
Open Access24 Scopus citations -
Metabolomics reveals novel insight on dormancy of aquatic invertebrate encysted embryos
Rozema, E., Kierszniowska, S., Almog-Gabai, O., Wilson, E. G., Choi, Y. H., Verpoorte, R., Hamo, R., Chalifa-Caspi, V., Assaraf, Y. G. & Lubzens, E., 1 Dec 2019, In: Scientific Reports. 9, 1, 8878.Research output: Contribution to journal › Article › peer-review
Open Access8 Scopus citations -
Packaging of DNA origami in viral capsids
Kopatz, I., Zalk, R., Levi-Kalisman, Y., Zlotkin-Rivkin, E., Frank, G. A. & Kler, S., 7 Jun 2019, In: Nanoscale. 11, 21, p. 10160-10166 7 p.Research output: Contribution to journal › Article › peer-review
26 Scopus citations -
Production of WW males lacking the masculine Z chromosome and mining the Macrobrachium rosenbergii genome for sex-chromosomes
Levy, T., Rosen, O., Manor, R., Dotan, S., Azulay, D., Abramov, A., Sklarz, M. Y., Chalifa-Caspi, V., Baruch, K., Shechter, A. & Sagi, A., 1 Dec 2019, In: Scientific Reports. 9, 1, 12408.Research output: Contribution to journal › Article › peer-review
Open Access27 Scopus citations -
Rapid atrial pacing promotes atrial fibrillation substrate in unanesthetized instrumented rats
Mulla, W., Hajaj, B., Elyagon, S., Mor, M., Gillis, R., Murninkas, M., Klapper-Goldstein, H., Plaschkes, I., Chalifa-Caspi, V., Etzion, S. & Etzion, Y., 1 Sep 2019, In: Frontiers in Physiology. 10, SEP, 1218.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Rewiring of cancer cell metabolism by mitochondrial VDAC1 depletion results in time- dependent tumor reprogramming: Glioblastoma as a proof of concept
Arif, T., Stern, O., Pittala, S., Chalifa-Caspi, V. & Shoshan-Barmatz, V., 1 Nov 2019, In: Cells. 8, 11, 1330.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
Streptococcus pneumoniae Cell Wall-Localized Trigger Factor Elicits a Protective Immune Response and Contributes to Bacterial Adhesion to the Host
Cohen, A., Troib, S., Dotan, S., Najmuldeen, H., Yesilkaya, H., Kushnir, T., Shagan, M., Portnoi, M., Nachmani, H., Benisty, R., Tal, M., Ellis, R., Chalifa-Caspi, V., Dagan, R. & Nebenzahl, Y. M., 1 Dec 2019, In: Scientific Reports. 9, 1, 4295.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations -
Synergistic effects of abiotic stresses in plants: a case study of nitrogen limitation and saturating light intensity in Arabidopsis thaliana
Cohen, I., Rapaport, T., Chalifa-Caspi, V. & Rachmilevitch, S., 1 Apr 2019, In: Physiologia Plantarum. 165, 4, p. 755-767 13 p.Research output: Contribution to journal › Article › peer-review
15 Scopus citations -
The cellulosome paradigm in an extreme alkaline environment
Phitsuwan, P., Moraïs, S., Dassa, B., Henrissat, B. & Bayer, E. A., 1 Sep 2019, In: Microorganisms. 7, 9, 347.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
2018
A Biclique Approach to Reference-Anchored Gene Blocks and Its Applications to Genomic Islands
Benshahar, A., Chalifa-Caspi, V., Hermelin, D. & Ziv-Ukelson, M., 1 Feb 2018, In: Journal of Computational Biology. 25, 2, p. 214-235 22 p.Research output: Contribution to journal › Article › peer-review
1 Scopus citations -
Assembly of synthetic functional cellulosomal structures onto the cell surface of Lactobacillus plantarum, a potent member of the gut microbiome
Stern, J., Moraïs, S., Ben-David, Y., Salama, R., Shamshoum, M., Lamed, R., Shoham, Y., Bayer, E. A. & Mizrahi, I., 1 Apr 2018, In: Applied and Environmental Microbiology. 84, 8, e00282-18.Research output: Contribution to journal › Article › peer-review
Open Access31 Scopus citations -
Flavin Reductase Contributes to Pneumococcal Virulence by Protecting from Oxidative Stress and Mediating Adhesion and Elicits Protection Against Pneumococcal Challenge
Morozov, G. I., Porat, N., Kushnir, T., Najmuldeen, H., Adawi, A., Chalifa-Caspi, V., Benisty, R., Ohayon, A., Liron, O., Azriel, S., Malka, I., Dotan, S., Portnoi, M., Piotrowski, A. A., Kafka, D., Hajaj, B., Fishilevich, T., Shagan, M., Tal, M. & Ellis, R. & 6 others, , 1 Dec 2018, In: Scientific Reports. 8, 1, 314.Research output: Contribution to journal › Article › peer-review
Open Access7 Scopus citations -
Molecular mode of action of asteriscus graveolens as an anticancer agent
Tayeh, Z., Dudai, N., Schechter, A., Chalifa-Caspi, V., Barak, S. & Ofir, R., 1 Aug 2018, In: International Journal of Molecular Sciences. 19, 8, 2162.Research output: Contribution to journal › Article › peer-review
Open Access12 Scopus citations -
Setting the pace: Host rhythmic behaviour and gene expression patterns in the facultatively symbiotic cnidarian Aiptasia are determined largely by Symbiodinium
Sorek, M., Schnytzer, Y., Waldman Ben-Asher, H., Caspi, V. C., Chen, C. S., Miller, D. J. & Levy, O., 9 May 2018, In: Microbiome. 6, 1, 83.Research output: Contribution to journal › Article › peer-review
Open Access41 Scopus citations -
Sporulation capability and amylosome conservation among diverse human colonic and rumen isolates of the keystone starch-degrader Ruminococcus bromii
Mukhopadhya, I., Moraïs, S., Laverde-Gomez, J., Sheridan, P. O., Walker, A. W., Kelly, W., Klieve, A. V., Ouwerkerk, D., Duncan, S. H., Louis, P., Koropatkin, N., Cockburn, D., Kibler, R., Cooper, P. J., Sandoval, C., Crost, E., Juge, N., Bayer, E. A. & Flint, H. J., 1 Jan 2018, In: Environmental Microbiology. 20, 1, p. 324-336 13 p.Research output: Contribution to journal › Article › peer-review
Open Access70 Scopus citations -
2017
A bioinformatics tool for ensuring the backwards compatibility of Legionella pneumophila typing in the genomic era
on behalf of & The ESCMID Study Group for Legionella Infections, 1 May 2017, In: Clinical Microbiology and Infection. 23, 5, p. 306-310 5 p.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
Clinical and molecular epidemiology of Acinetobacter baumannii bloodstream infections in an endemic setting
Marchaim, D., Levit, D., Zigron, R., Gordon, M., Lazarovitch, T., Carrico, J. A., Chalifa-Caspi, V. & Moran-Gilad, J., 1 Mar 2017, In: Future Microbiology. 12, 4, p. 271-283 13 p.Research output: Contribution to journal › Article › peer-review
20 Scopus citations -
Dormancy in embryos: Insight from hydrated encysted embryos of an aquatic invertebrate
Ziv, T., Chalifa-Caspi, V., Denekamp, N., Plaschkes, I., Kierszniowska, S., Blais, I., Admon, A. & Lubzens, E., 1 Oct 2017, In: Molecular and Cellular Proteomics. 16, 10, p. 1746-1769 24 p.Research output: Contribution to journal › Article › peer-review
Open Access14 Scopus citations -
Pan-cellulosomics of mesophilic clostridia: Variations on a theme
Dassa, B., Borovok, I., Lombard, V., Henrissat, B., Lamed, R., Bayer, E. A. & Moraïs, S., 1 Dec 2017, In: Microorganisms. 5, 4, 74.Research output: Contribution to journal › Article › peer-review
Open Access17 Scopus citations -
The dead, hardened floral bracts of dispersal units of wild wheat function as storage for active hydrolases and in enhancing seedling vigor
Raviv, B., Granot, G., Chalifa-Caspi, V. & Grafi, G., 1 May 2017, In: PLoS ONE. 12, 5, e0177537.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
2016
ALFY-Controlled DVL3 Autophagy Regulates Wnt Signaling, Determining Human Brain Size
Kadir, R., Harel, T., Markus, B., Perez, Y., Bakhrat, A., Cohen, I., Volodarsky, M., Feintsein-Linial, M., Chervinski, E., Zlotogora, J., Sivan, S., Birnbaum, R. Y., Abdu, U., Shalev, S. & Birk, O. S., 1 Mar 2016, In: PLoS Genetics. 12, 3, e1005919.Research output: Contribution to journal › Article › peer-review
Open Access68 Scopus citations -
A transcriptional time-course analysis of oral vs. aboral whole-body regeneration in the Sea anemone Nematostella vectensis
Schaffer, A. A., Bazarsky, M., Levy, K., Chalifa-Caspi, V. & Gat, U., 7 Sep 2016, In: BMC Genomics. 17, 1, 718.Research output: Contribution to journal › Article › peer-review
Open Access33 Scopus citations -
Streptococcus pneumoniae cell-wall-localized phosphoenolpyruvate protein phosphotransferase can function as an adhesin: Identification of its host target molecules and evaluation of its potential as a vaccine
Nebenzahl, Y. M., Blau, K., Kushnir, T., Shagan, M., Portnoi, M., Cohen, A., Azriel, S., Malka, I., Adawi, A., Kafka, D., Dotan, S., Guterman, G., Troib, S., Fishilevich, T., Gershoni, J. M., Braiman, A., Mitchell, A. M., Mitchell, T. J., Porat, N. & Goliand, I. & 6 others, , 1 Mar 2016, In: PLoS ONE. 11, 3, e0150320.Research output: Contribution to journal › Article › peer-review
Open Access19 Scopus citations -
The development of a novel qPCR assay-set for identifying fecal contamination originating from domestic fowls and waterfowl in Israel
Ohad, S., Ben-Dor, S., Prilusky, J., Kravitz, V., Dassa, B., Chalifa-Caspi, V., Kashi, Y. & Rorman, E., 17 Feb 2016, In: Frontiers in Microbiology. 7, FEB, 145.Research output: Contribution to journal › Article › peer-review
Open Access18 Scopus citations -
2015
A combination of gene expression ranking and co-expression network analysis increases discovery rate in large-scale mutant screens for novel Arabidopsis thaliana abiotic stress genes
Ransbotyn, V., Yeger-Lotem, E., Basha, O., Acuna, T., Verduyn, C., Gordon, M., Chalifa-Caspi, V., Hannah, M. A. & Barak, S., 5 Nov 2015, In: Plant Biotechnology Journal. 13, 4, p. 501-513 13 p.Research output: Contribution to journal › Article › peer-review
Open Access30 Scopus citations