Research output per year
Research output per year
Personal profile
Research interests
- Computational and Mathematical Biology
- RNA structure prediction
- Viral dynamics
- Computational imaging
- Scientific computing
- Numerical analysis.
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Dive into the research topics where Danny Barash is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
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A Computational Approach for Designing Synthetic Riboswitches for Next-Generation RNA Therapeutics
Mukherjee, S., Mukherjee, S. B. & Barash, D., 1 Jan 2025, Methods in Molecular Biology. Humana Press Inc., p. 193-204 12 p. (Methods in Molecular Biology; vol. 2847).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Over time analysis of the codon usage of SARS-CoV-2 and its variants
Davidson, A., Parr, M., Totzeck, F., Churkin, A., Barash, D., Frishman, D. & Tuller, T., 1 Jan 2025, In: Computational and Structural Biotechnology Journal. 27, p. 2034-2050 17 p.Research output: Contribution to journal › Article › peer-review
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Preface
Churkin, A. & Barash, D., 1 Jan 2025, In: Methods in Molecular Biology. 2847, p. v-viiiResearch output: Contribution to journal › Editorial
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RNA Design Using incaRNAfbinv Demonstrated with the Identification of Functional RNA Motifs in Hepatitis Delta Virus
Zakh, R., Churkin, A. & Barash, D., 1 Jan 2025, Methods in Molecular Biology. Humana Press Inc., p. 109-120 12 p. (Methods in Molecular Biology; vol. 2847).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Designing RNA switches for synthetic biology using inverse-RNA-folding
Mukherjee, S. & Barash, D., 1 May 2024, In: Trends in Biotechnology. 42, 5, p. 517-521 5 p.Research output: Contribution to journal › Short survey › peer-review
6 Scopus citations -
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans
Davidson, A., Parr, M., Totzeck, F., Churkin, A., Barash, D., Frishman, D. & Tuller, T., 1 Jan 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 248-270 23 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding
Mukherjee, S., Retwitzer, M. D., Hubbell, S. M., Meyer, M. M. & Barash, D., 1 May 2023, In: Briefings in Bioinformatics. 24, 3, bbad110.Research output: Contribution to journal › Article › peer-review
7 Scopus citations -
Advances in Parameter Estimation for Mathematical Models of Hepatitis C Viral Kinetics
Reinharz, V., Churkin, A., Dahari, H. & Barash, D., 1 Sep 2023, In: AIP CONFERENCE PROCEEDINGS. 2849, 1, 270001.Research output: Contribution to journal › Conference article › peer-review
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Modeling suggests that virion production cycles within individual cells is key to understanding acute hepatitis B virus infection kinetics
Hailegiorgis, A., Ishida, Y., Collier, N., Imamura, M., Shi, Z., Reinharz, V., Tsuge, M., Barash, D., Hiraga, N., Yokomichi, H., Tateno, C., Ozik, J., Uprichard, S. L., Chayama, K. & Dahari, H., 1 Aug 2023, In: PLoS Computational Biology. 19, 8 August, e1011309.Research output: Contribution to journal › Article › peer-review
Open Access5 Scopus citations -
Advances in Parameter Estimation and Learning from Data for Mathematical Models of Hepatitis C Viral Kinetics
Reinharz, V., Churkin, A., Dahari, H. & Barash, D., 1 Jun 2022, In: Mathematics. 10, 12, 2136.Research output: Contribution to journal › Article › peer-review
Open Access6 Scopus citations