Research output per year
Research output per year
Personal profile
Research interests
- Computational and Mathematical Biology
- RNA structure prediction
- Viral dynamics
- Computational imaging
- Scientific computing
- Numerical analysis.
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Dive into the research topics where Danny Barash is active. These topic labels come from the works of this person. Together they form a unique fingerprint.
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Collaborations and top research areas from the last five years
Recent external collaboration on country/territory level. Dive into details by clicking on the dots or
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RNA design: update on computational frameworks and programs for inverse RNA folding
Mukherjee, S., Zakh, R., Churkin, A. & Barash, D., 1 May 2026, In: Briefings in Bioinformatics. 27, 3, bbag327.Research output: Contribution to journal › Review article › peer-review
Open Access -
Towards an improved mathematical model for HDV-HBV interaction during anti-HDV treatment
Mhlanga, A., Zakh, R., Churkin, A., Reinharz, V., Dahari, H. & Barash, D., 7 May 2026, AIP Conference Proceedings. Simos, T. E. & Tsitouras, C. (eds.). 1 ed. American Institute of Physics, 280059. (AIP Conference Proceedings; vol. 3489, no. 1).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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A Computational Approach for Designing Synthetic Riboswitches for Next-Generation RNA Therapeutics
Mukherjee, S., Mukherjee, S. B. & Barash, D., 1 Jan 2025, Methods in Molecular Biology. Humana Press Inc., p. 193-204 12 p. (Methods in Molecular Biology; vol. 2847).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
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Over time analysis of the codon usage of SARS-CoV-2 and its variants
Davidson, A., Parr, M., Totzeck, F., Churkin, A., Barash, D., Frishman, D. & Tuller, T., 1 Jan 2025, In: Computational and Structural Biotechnology Journal. 27, p. 2034-2050 17 p.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Preface
Churkin, A. & Barash, D., 1 Jan 2025, In: Methods in Molecular Biology. 2847, p. v-viiiResearch output: Contribution to journal › Editorial
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RNA Design Using incaRNAfbinv Demonstrated with the Identification of Functional RNA Motifs in Hepatitis Delta Virus
Zakh, R., Churkin, A. & Barash, D., 1 Jan 2025, Methods in Molecular Biology. Humana Press Inc., p. 109-120 12 p. (Methods in Molecular Biology; vol. 2847).Research output: Chapter in Book/Report/Conference proceeding › Chapter › peer-review
3 Scopus citations -
The bioinformatics of the finding that the hepatitis delta virus RNA editing mechanism by a conformational switch exists in genotype 7 in addition to genotype 3
Zakh, R., Churkin, A., Parr, M., Tuller, T., Etzion, O., Dahari, H. & Barash, D., 1 Sep 2025, In: Briefings in Bioinformatics. 26, 5, bbaf451.Research output: Contribution to journal › Article › peer-review
Open Access1 Scopus citations -
Designing RNA switches for synthetic biology using inverse-RNA-folding
Mukherjee, S. & Barash, D., 1 May 2024, In: Trends in Biotechnology. 42, 5, p. 517-521 5 p.Research output: Contribution to journal › Short survey › peer-review
8 Scopus citations -
Evidence of Increased Adaptation of Omicron SARS-CoV-2 Codons to Humans
Davidson, A., Parr, M., Totzeck, F., Churkin, A., Barash, D., Frishman, D. & Tuller, T., 1 Jan 2024, Comparative Genomics - 21st International Conference, RECOMB-CG 2024, Proceedings. Scornavacca, C. & Hernández-Rosales, M. (eds.). Springer Science and Business Media Deutschland GmbH, p. 248-270 23 p. (Lecture Notes in Computer Science (including subseries Lecture Notes in Artificial Intelligence and Lecture Notes in Bioinformatics); vol. 14616 LNBI).Research output: Chapter in Book/Report/Conference proceeding › Conference contribution › peer-review
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A computational approach for the identification of distant homologs of bacterial riboswitches based on inverse RNA folding
Mukherjee, S., Retwitzer, M. D., Hubbell, S. M., Meyer, M. M. & Barash, D., 1 May 2023, In: Briefings in Bioinformatics. 24, 3, bbad110.Research output: Contribution to journal › Article › peer-review
Open Access10 Scopus citations
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Computational and Experimental Studies of Riboswitch Domains
Barash, D. (PI), Bolshoy, A. (CoPI), Trifonov, E. N. (CoPI) & Nudler, E. E. (CoPI)
United States-Israel Binational Science Foundation (BSF)
1/01/03 → …
Project: Research
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Computational Biology of Riboswitches: Pattern Detection and Comparative Genomics
Barash, D. (PI) & Sengupta, S. (CoPI)
1/01/14 → 1/01/17
Project: Research