Analysis of genetic variation in sorghum (Sorghum bicolor (L.) Moench) genotypes with various agronomical traits using SPAR methods

Lakkakula Satish, Jayabalan Shilpha, Subramani Pandian, Arockiam Sagina Rency, Periyasamy Rathinapriya, Stanislaus Antony Ceasar, Muthiah Joe Virgin Largia, Are Ashok Kumar, Manikandan Ramesh

Research output: Contribution to journalArticlepeer-review

21 Scopus citations

Abstract

Genetic variation among 45 genotypes of sorghum (Sorghum bicolor L.) representing seven subpopulations was assessed using three single primer amplification reaction (SPAR) methods viz., inter-simple sequence repeat (ISSR), random amplified polymorphic DNA (RAPD) and directed amplification of minisatellite-region DNA (DAMD). Totally 15 ISSR, 8 RAPD and 7 DAMD primers generated 263 amplification products, accounting for 84.6% polymorphism across all the genotypes. The Mantel's test of correlation revealed the best correlation between ISSR and cumulative data with a correlation coefficient (r) of 0.84. Assessment of population diversity indicated that the maximum intra population genetic diversity was recorded among high FeZn lines (HFL) having maximum values of Nei's genetic diversity (h) (0.244), Shannon information index (I) (0.368) and the percentage of polymorphic loci (Pp) (72.65%) while the corresponding lowest values of 0.074, 0.109 and 17.95% respectively were observed among the members of MDT subpopulation. The mean coefficient of gene differentiation (GST) and the gene flow (Nm) between populations were observed to be 0.396 and 0.7680 respectively. The analysis of molecular variance (AMOVA) suggested that maximum genetic variation exists within populations (95%) than among populations (5%). Thus the information obtained from this study could be utilized in sorghum breeding programmes for the development of varieties with improved nutrition and agronomic values in future.

Original languageEnglish
Pages (from-to)581-585
Number of pages5
JournalGene
Volume576
Issue number1
DOIs
StatePublished - 15 Jan 2016
Externally publishedYes

Keywords

  • DAMD
  • Genetic variation
  • ISSR
  • RAPD
  • SPAR methods
  • Sorghum

ASJC Scopus subject areas

  • Genetics

Fingerprint

Dive into the research topics of 'Analysis of genetic variation in sorghum (Sorghum bicolor (L.) Moench) genotypes with various agronomical traits using SPAR methods'. Together they form a unique fingerprint.

Cite this