Characterization of the complete chloroplast genome of Ottelia alismoides (Hydrocharitaceae), a vulnerable submerged macrophyte in China

Jian Ling Guo; Yan Hong Yu; Yong Hong Zhang

doi:10.1080/23802359.2019.1704197

Characterization of the complete chloroplast genome of Ottelia alismoides (Hydrocharitaceae), a vulnerable submerged macrophyte in China

Jian Ling Guo, Yan Hong Yu, Yong Hong Zhang

Research output: Contribution to journal › Article › peer-review

2 Scopus citations

Abstract

Ottelia alismoides (Linn.) Pers. (Hydrocharitaceae) is an endangered submerged macrophyte in China. In his study, we assembled complete chloroplast (cp) genome of O. alismoides based on the Illumina reads. The cp genome of O. alismoides was 157,885 bp in length, including a large single copy (LSC) region of 87,707 bp and small single copy (SSC) region of 20,234 bp, separated by two inverted repeat (IR) regions of 24,972 bp each. The cp genome encoded 115 genes including 70 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content of cp genome of O. alismoides is 36.6%. A maximum likelihood phylogenetic analysis revealed that O. alismoides is closely related to O. acuminate var. songmingensis.

Original language	English
Pages (from-to)	404-405
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	5
Issue number	1
DOIs	https://doi.org/10.1080/23802359.2019.1704197
State	Published - 2 Jan 2020
Externally published	Yes

Keywords

Ottelia alismoides
chloroplast genome
submerged macrophyte endangered species

ASJC Scopus subject areas

Molecular Biology
Genetics

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1080/23802359.2019.1704197

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title = "Characterization of the complete chloroplast genome of Ottelia alismoides (Hydrocharitaceae), a vulnerable submerged macrophyte in China",

abstract = "Ottelia alismoides (Linn.) Pers. (Hydrocharitaceae) is an endangered submerged macrophyte in China. In his study, we assembled complete chloroplast (cp) genome of O. alismoides based on the Illumina reads. The cp genome of O. alismoides was 157,885 bp in length, including a large single copy (LSC) region of 87,707 bp and small single copy (SSC) region of 20,234 bp, separated by two inverted repeat (IR) regions of 24,972 bp each. The cp genome encoded 115 genes including 70 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content of cp genome of O. alismoides is 36.6\%. A maximum likelihood phylogenetic analysis revealed that O. alismoides is closely related to O. acuminate var. songmingensis.",

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doi = "10.1080/23802359.2019.1704197",

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T1 - Characterization of the complete chloroplast genome of Ottelia alismoides (Hydrocharitaceae), a vulnerable submerged macrophyte in China

AU - Guo, Jian Ling

AU - Yu, Yan Hong

AU - Zhang, Yong Hong

PY - 2020/1/2

Y1 - 2020/1/2

N2 - Ottelia alismoides (Linn.) Pers. (Hydrocharitaceae) is an endangered submerged macrophyte in China. In his study, we assembled complete chloroplast (cp) genome of O. alismoides based on the Illumina reads. The cp genome of O. alismoides was 157,885 bp in length, including a large single copy (LSC) region of 87,707 bp and small single copy (SSC) region of 20,234 bp, separated by two inverted repeat (IR) regions of 24,972 bp each. The cp genome encoded 115 genes including 70 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content of cp genome of O. alismoides is 36.6%. A maximum likelihood phylogenetic analysis revealed that O. alismoides is closely related to O. acuminate var. songmingensis.

AB - Ottelia alismoides (Linn.) Pers. (Hydrocharitaceae) is an endangered submerged macrophyte in China. In his study, we assembled complete chloroplast (cp) genome of O. alismoides based on the Illumina reads. The cp genome of O. alismoides was 157,885 bp in length, including a large single copy (LSC) region of 87,707 bp and small single copy (SSC) region of 20,234 bp, separated by two inverted repeat (IR) regions of 24,972 bp each. The cp genome encoded 115 genes including 70 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The GC content of cp genome of O. alismoides is 36.6%. A maximum likelihood phylogenetic analysis revealed that O. alismoides is closely related to O. acuminate var. songmingensis.

KW - Ottelia alismoides

KW - chloroplast genome

KW - submerged macrophyte endangered species

UR - https://www.scopus.com/pages/publications/85078972450

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DO - 10.1080/23802359.2019.1704197

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SN - 2380-2359

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IS - 1

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Characterization of the complete chloroplast genome of Ottelia alismoides (Hydrocharitaceae), a vulnerable submerged macrophyte in China

Abstract

Keywords

ASJC Scopus subject areas

UN SDGs

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