Coding for Optimized Writing Rate in DNA Storage

Siddharth Jain, Farzad Farnoud, Moshe Schwartz, Jehoshua Bruck

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

4 Scopus citations

Abstract

A method for encoding information in DNA sequences is described. The method is based on the precisionresolution framework, and is aimed to work in conjunction with a recently suggested terminator-free template independent DNA synthesis method. The suggested method optimizes the amount of information bits per synthesis time unit, namely, the writing rate. Additionally, the encoding scheme studied here takes into account the existence of multiple copies of the DNA sequence, which are independently distorted. Finally, quantizers for various run-length distributions are designed.

Original languageEnglish
Title of host publication2020 IEEE International Symposium on Information Theory, ISIT 2020 - Proceedings
PublisherInstitute of Electrical and Electronics Engineers Inc.
Pages711-716
Number of pages6
ISBN (Electronic)9781728164328
DOIs
StatePublished - 1 Jun 2020
Event2020 IEEE International Symposium on Information Theory, ISIT 2020 - Los Angeles, United States
Duration: 21 Jul 202026 Jul 2020

Publication series

NameIEEE International Symposium on Information Theory - Proceedings
Volume2020-June
ISSN (Print)2157-8095

Conference

Conference2020 IEEE International Symposium on Information Theory, ISIT 2020
Country/TerritoryUnited States
CityLos Angeles
Period21/07/2026/07/20

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