DoChaP: The domain change presenter

Shani T. Gal-Oz, Nimrod Haiat, Dana Eliyahu, Guy Shani, Tal Shay

Research output: Contribution to journalArticlepeer-review

3 Scopus citations

Abstract

Alternative splicing results in multiple transcripts of the same gene, possibly encoding for different protein isoforms with different domains. Whereas it is possible to manually determine the effect of alternative splicing on the domain composition for a single event, the process requires the tedious integration of several data sources; it is error prone and not feasible for genome-wide characterization of domains affected by differential splicing. To fulfill the need for an automated solution, we developed the Domain Change Presenter (DoChaP, https://dochap.bgu.ac.il/), a web server for the visualization of exon-domain associations. DoChaP visualizes all transcripts of a given gene, the encoded proteins and their domains, and enables a comparison between the transcripts and between their protein products. The colors and organization make the structural effect of alternative splicing events on protein structures easily identified. To enable the study of the conservation of exons structure, alternative splicing, and the effect of alternative splicing on protein domains, DoChaP also provides a two-species comparison of exon-domain associations. DoChaP thus provides a unique and easy-to-use visualization of the exon-domain association and conservation, and will facilitate the study of the structural effects of alternative splicing in health and disease.

Original languageEnglish
Pages (from-to)W162-W168
JournalNucleic Acids Research
Volume49
Issue numberW1
DOIs
StatePublished - 2 Jul 2021

ASJC Scopus subject areas

  • Genetics

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