TY - JOUR
T1 - FASH: A web application for nucleotides sequence search
AU - Veksler-Lublinksy, Isana
AU - Barash, Danny
AU - Avisar, Chai
AU - Troim, Einav
AU - Chew, Paul
AU - Kedem, Klara
PY - 2008/5
Y1 - 2008/5
N2 - ABSTRACT: : FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a query sequence and a long text-sequence (e.g, the human genome), FASH detects subsequences within the text that are remotely-similar to the query. FASH offers an alternative approach to Blast/Fasta for querying long RNA/DNA sequences. FASH differs from these other approaches in that it does not depend on the existence of contiguous seed-sequences in its initial detection phase. The FASH web server is user friendly and very easy to operate. AVAILABILITY: FASH can be accessed athttps://fash.bgu.ac.il:8443/fash/default.jsp (secured website).
AB - ABSTRACT: : FASH (Fourier Alignment Sequence Heuristics) is a web application, based on the Fast Fourier Transform, for finding remote homologs within a long nucleic acid sequence. Given a query sequence and a long text-sequence (e.g, the human genome), FASH detects subsequences within the text that are remotely-similar to the query. FASH offers an alternative approach to Blast/Fasta for querying long RNA/DNA sequences. FASH differs from these other approaches in that it does not depend on the existence of contiguous seed-sequences in its initial detection phase. The FASH web server is user friendly and very easy to operate. AVAILABILITY: FASH can be accessed athttps://fash.bgu.ac.il:8443/fash/default.jsp (secured website).
U2 - 10.1186/1751-0473-3-9
DO - 10.1186/1751-0473-3-9
M3 - Article
SN - 1751-0473
VL - 3
SP - 1
EP - 6
JO - Source Code for Biology and Medicine
JF - Source Code for Biology and Medicine
IS - 9
ER -