@inproceedings{e9841992e9604531bf61854dad169b90,
title = "FiltPIM: In-Memory Filter for DNA Sequencing",
abstract = "Aligning the entire genome of an organism is a compute-intensive task. Pre-alignment filters substantially reduce computation complexity by filtering potential alignment locations. The base-count filter successfully removes over 68\% of the potential locations through a histogram-based heuristic. This paper presents FiltPIM, an efficient design of the base-count filter that is based on memristive processing-in-memory. The in-memory design reduces CPU-to-memory data transfer and utilizes both intra-crossbar and inter-crossbar memristive stateful-logic parallelism. The reduction in data transfer and the efficient stateful-logic computation together improve filtering time by 100x compared to a CPU implementation of the filter.",
author = "Marcel Khalifa and Rotem Ben-Hur and Ronny Ronen and Orian Leitersdorf and Leonid Yavits and Shahar Kvatinsky",
note = "Publisher Copyright: {\textcopyright} 2021 IEEE.; 28th IEEE International Conference on Electronics, Circuits, and Systems, ICECS 2021 ; Conference date: 28-11-2021 Through 01-12-2021",
year = "2021",
month = jan,
day = "1",
doi = "10.1109/ICECS53924.2021.9665570",
language = "English",
series = "2021 28th IEEE International Conference on Electronics, Circuits, and Systems, ICECS 2021 - Proceedings",
publisher = "Institute of Electrical and Electronics Engineers",
booktitle = "2021 28th IEEE International Conference on Electronics, Circuits, and Systems, ICECS 2021 - Proceedings",
address = "United States",
}