Formation of periodic γ-turns in α/β-hybrid peptides: DFT and NMR experimental evidence

Srivari Chandrasekhar, Kakita Veera Mohana Rao, Mallikanti Seenaiah, Police Naresh, Ambure Sharada Devi, Bharatam Jagadeesh

Research output: Contribution to journalArticlepeer-review

6 Scopus citations

Abstract

Hybrid peptidic oligomers comprising natural and unnatural amino acid residues that can exhibit biomolecular folding and hydrogen-bonding mimicry have attracted considerable interest in recent years. While a variety of hybrid peptidic helices have been reported in the literature, other secondary structural patterns such as γ-turns and ribbons have not been well explored so far. The present work reports the design of novel periodic γ-turns in the oligomers of 1:1 natural-α/unnatural trans-β-norborenene (TNAA) amino acid residues. Through DFT, NMR, and MD studies, it is convincingly shown that, in the mixed conformational pool, the heterogeneous backbone of the hybrid peptides preferentially adopt periodic 8-membered (pseudo γ-turn)/7-membered (inverse γ-turn) hydrogen bonds in both polar and non-polar solvent media. It is observed that the stereochemistry and local conformational preference of the β-amino acid building blocks have a profound influence on accessing the specific secondary fold. These findings may be of significant relevance for the development of molecular scaffolds that facilitate desired positioning of functional side-chains.

Original languageEnglish
Pages (from-to)457-461
Number of pages5
JournalChemistry - An Asian Journal
Volume9
Issue number2
DOIs
StatePublished - 1 Feb 2014
Externally publishedYes

Keywords

  • density functional calculations
  • hybrid peptides
  • molecular dynamics
  • NMR spectroscopy
  • periodic γ-turns

ASJC Scopus subject areas

  • Biochemistry
  • General Chemistry
  • Organic Chemistry

Fingerprint

Dive into the research topics of 'Formation of periodic γ-turns in α/β-hybrid peptides: DFT and NMR experimental evidence'. Together they form a unique fingerprint.

Cite this