GeneAnnot: interfacing GeneCards with high-throughput gene expression compendia.

Vered Chalifa-Caspi, Orit Shmueli, Hila Benjamin-Rodrig, Naomi Rosen, Michael Shmoish, Itai Yanai, Ron Ophir, Pavel Kats, Marilyn Safran, Doron Lancet

Research output: Contribution to journalArticlepeer-review

16 Scopus citations


The interpretation of microarray expression results often includes extensive efforts to identify and annotate the gene representatives immobilised on the arrays. In this paper we describe the usage of our automatic GeneAnnot system, which links between Affymetrix arrays and the rich human gene annotations available in GeneCards. We explain GeneCards search options and results display; elaborate on the presentation of expression information in GeneCards, including both our whole-genome GeneNote project and external expression resources; describe the various parameters and displays used by GeneAnnot to assess the annotation quality and probeset specificity; and show how to search GeneAnnot and GeneNote websites directly.

Original languageEnglish
Pages (from-to)349-360
Number of pages12
JournalBriefings in Bioinformatics
Issue number4
StatePublished - 1 Jan 2003

ASJC Scopus subject areas

  • Information Systems
  • Molecular Biology


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