Improved Parameterized Algorithms for Network Query Problems

Ron Y. Pinter, Hadas Shachnai, Meirav Zehavi

Research output: Contribution to journalArticlepeer-review

Abstract

In the Partial Information Network Query (PINQ) problem, we are given a host graph H, and a pattern P whose topology is partially known. We seek a connected subgraph of H that resemblesP. PINQ is a generalization of Subgraph Isomorphism, where the topology of P is known, and Graph Motif, where the topology of P is unknown. This generalization addresses the major challenge of analyzing biological networks in the absence of certain topological data. In this paper, we use a non-standard hybridization of algebraic and combinatorial tools to develop an exact parameterized algorithm as well as an FPT-approximation scheme for PINQ.

Original languageEnglish
Pages (from-to)2270-2316
Number of pages47
JournalAlgorithmica
Volume81
Issue number6
DOIs
StatePublished - 1 Jun 2019
Externally publishedYes

Keywords

  • Alignment network query
  • Graph motif
  • Narrow sieves
  • Parameterized algorithm
  • Partial information network query

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