TY - JOUR
T1 - Rate limit of protein elastic response is tether dependent
AU - Berkovich, Ronen
AU - Hermans, Rodolfo I.
AU - Popa, Ionel
AU - Stirnemannc, Guillaume
AU - Garcia-Manyes, Sergi
AU - Berne, Bruce J.
AU - Fernandez, Julio M.
PY - 2012/9/4
Y1 - 2012/9/4
N2 - The elastic restoring force of tissues must be able to operate over the very wide range of loading rates experienced by living organisms. It is surprising that even the fastest events involving animal muscle tissues do not surpass a few hundred hertz. We propose that this limit is set in part by the elastic dynamics of tethered proteins extending and relaxing under a changing load. Here we study the elastic dynamics of tethered proteins using a fast force spectrometer with sub-millisecond time resolution, combined with Brownian and Molecular Dynamics simulations. We show that the act of tethering a polypeptide to an object, an inseparable part of protein elasticity in vivo and in experimental setups, greatly reduces the attempt frequency with which the protein samples its free energy. Indeed, our data shows that a tethered polypeptide can traverse its free-energy landscape with a surprisingly low effective diffusion coefficient Deff ∼ 1,200 nm2?s. By contrast, our Molecular Dynamics simulations show that diffusion of an isolated protein under force occurs at Deff ∼ 108 nm2?s. This discrepancy is attributed to the drag force caused by the tethering object. From the physiological time scales of tissue elasticity, we calculate that tethered elastic proteins equilibrate in vivo with Deff ∼ 10 4-106 nm2?s which is two to four orders magnitude smaller than the values measured for untethered proteins in bulk.
AB - The elastic restoring force of tissues must be able to operate over the very wide range of loading rates experienced by living organisms. It is surprising that even the fastest events involving animal muscle tissues do not surpass a few hundred hertz. We propose that this limit is set in part by the elastic dynamics of tethered proteins extending and relaxing under a changing load. Here we study the elastic dynamics of tethered proteins using a fast force spectrometer with sub-millisecond time resolution, combined with Brownian and Molecular Dynamics simulations. We show that the act of tethering a polypeptide to an object, an inseparable part of protein elasticity in vivo and in experimental setups, greatly reduces the attempt frequency with which the protein samples its free energy. Indeed, our data shows that a tethered polypeptide can traverse its free-energy landscape with a surprisingly low effective diffusion coefficient Deff ∼ 1,200 nm2?s. By contrast, our Molecular Dynamics simulations show that diffusion of an isolated protein under force occurs at Deff ∼ 108 nm2?s. This discrepancy is attributed to the drag force caused by the tethering object. From the physiological time scales of tissue elasticity, we calculate that tethered elastic proteins equilibrate in vivo with Deff ∼ 10 4-106 nm2?s which is two to four orders magnitude smaller than the values measured for untethered proteins in bulk.
KW - Force spectroscopy
KW - Protein diffusion
KW - Single molecule
KW - Viscoelasticity
UR - http://www.scopus.com/inward/record.url?scp=84865975569&partnerID=8YFLogxK
U2 - 10.1073/pnas.1212167109
DO - 10.1073/pnas.1212167109
M3 - Article
C2 - 22895787
AN - SCOPUS:84865975569
SN - 0027-8424
VL - 109
SP - 14416
EP - 14421
JO - Proceedings of the National Academy of Sciences of the United States of America
JF - Proceedings of the National Academy of Sciences of the United States of America
IS - 36
ER -