Rate limit of protein elastic response is tether dependent

Ronen Berkovich, Rodolfo I. Hermans, Ionel Popa, Guillaume Stirnemannc, Sergi Garcia-Manyes, Bruce J. Berne, Julio M. Fernandez

Research output: Contribution to journalArticlepeer-review

56 Scopus citations

Abstract

The elastic restoring force of tissues must be able to operate over the very wide range of loading rates experienced by living organisms. It is surprising that even the fastest events involving animal muscle tissues do not surpass a few hundred hertz. We propose that this limit is set in part by the elastic dynamics of tethered proteins extending and relaxing under a changing load. Here we study the elastic dynamics of tethered proteins using a fast force spectrometer with sub-millisecond time resolution, combined with Brownian and Molecular Dynamics simulations. We show that the act of tethering a polypeptide to an object, an inseparable part of protein elasticity in vivo and in experimental setups, greatly reduces the attempt frequency with which the protein samples its free energy. Indeed, our data shows that a tethered polypeptide can traverse its free-energy landscape with a surprisingly low effective diffusion coefficient Deff ∼ 1,200 nm2?s. By contrast, our Molecular Dynamics simulations show that diffusion of an isolated protein under force occurs at Deff ∼ 108 nm2?s. This discrepancy is attributed to the drag force caused by the tethering object. From the physiological time scales of tissue elasticity, we calculate that tethered elastic proteins equilibrate in vivo with Deff ∼ 10 4-106 nm2?s which is two to four orders magnitude smaller than the values measured for untethered proteins in bulk.

Original languageEnglish
Pages (from-to)14416-14421
Number of pages6
JournalProceedings of the National Academy of Sciences of the United States of America
Volume109
Issue number36
DOIs
StatePublished - 4 Sep 2012
Externally publishedYes

Keywords

  • Force spectroscopy
  • Protein diffusion
  • Single molecule
  • Viscoelasticity

ASJC Scopus subject areas

  • General

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