Recovery of Noisy Pooled Tests via Learned Factor Graphs with Application to COVID-19 Testing.

Eyal Fishel Ben-Knaan, Yonina C. Eldar, Nir Shlezinger

Research output: Chapter in Book/Report/Conference proceedingConference contributionpeer-review

Abstract

The ongoing pandemic and the necessity of frequent testing have spurred a growing interest in pooled testing. Conventional recovery methods from pooled tests are based on group testing or compressed sensing tools which rely on simplistic modeling of the pooling process, and may not be reliable in the presence of complex and noisy measurement procedures and highly infected populations. In this work, we propose a strategy for pooled testing designed for noisy settings, which bypasses the need for a tractable acquisition model. This is achieved by combining deep learning, for implicitly learning the measurement relationship from data, with factor graph inference, which exploits the structured known pooling pattern. Learned factor graphs provide a quantitative readout corresponding to the infection severity, as opposed to group testing which only detects the presence of infection. The proposed scheme is shown to achieve improved robustness to noise compared with previous approaches and to reliably estimate in highly infected populations.
Original languageEnglish
Title of host publicationICASSP
Pages4518-4522
Number of pages5
DOIs
StatePublished - 2022

Keywords

  • Deep learning
  • Sociology
  • Signal processing algorithms
  • Signal processing
  • Inference algorithms
  • Pollution measurement
  • Factor Graphs
  • pooling

Fingerprint

Dive into the research topics of 'Recovery of Noisy Pooled Tests via Learned Factor Graphs with Application to COVID-19 Testing.'. Together they form a unique fingerprint.

Cite this