The complete chloroplast genome of a critically endangered agarwood tree, Aquilaria crassna (Thymelaeaceae)

Guo Dong Li; Pei Yu Rao; Jian Ling Guo; Yong Hong Zhang

doi:10.1080/23802359.2019.1613200

The complete chloroplast genome of a critically endangered agarwood tree, Aquilaria crassna (Thymelaeaceae)

Guo Dong Li, Pei Yu Rao, Jian Ling Guo, Yong Hong Zhang

Research output: Contribution to journal › Article › peer-review

6 Scopus citations

Abstract

Aquilaria crassna Pierre ex Lecomte is a principal agarwood tree resource. It has been listed as a critically endangered species. The complete chloroplast genome of A. crassna was assembled based on next-generation sequencing. The plastome was a quadripartite circular shape with 174,830 bp in length, including a large single-copy (LSC) region of 87,450 bp and small single-copy (SSC) region of 3346 bp, separated by two inverted repeat (IR) regions of 42,017 bp each. The chloroplast genome contained 125 genes, including 79 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the whole genome was 36.7%. The phylogenetic tree showed that three species of Aquilaria formed one monophyletic clade with 100% bootstrap value.

Original language	English
Pages (from-to)	1810-1811
Number of pages	2
Journal	Mitochondrial DNA Part B: Resources
Volume	4
Issue number	1
DOIs	https://doi.org/10.1080/23802359.2019.1613200
State	Published - 2 Jan 2019
Externally published	Yes

Keywords

Aquilaria crassna Pierre ex Lecomte
chloroplast genome
critically endangered species
phylogenetic analysis

ASJC Scopus subject areas

Molecular Biology
Genetics

UN SDGs

This output contributes to the following UN Sustainable Development Goals (SDGs)

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10.1080/23802359.2019.1613200

Cite this

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title = "The complete chloroplast genome of a critically endangered agarwood tree, Aquilaria crassna (Thymelaeaceae)",

abstract = "Aquilaria crassna Pierre ex Lecomte is a principal agarwood tree resource. It has been listed as a critically endangered species. The complete chloroplast genome of A. crassna was assembled based on next-generation sequencing. The plastome was a quadripartite circular shape with 174,830 bp in length, including a large single-copy (LSC) region of 87,450 bp and small single-copy (SSC) region of 3346 bp, separated by two inverted repeat (IR) regions of 42,017 bp each. The chloroplast genome contained 125 genes, including 79 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the whole genome was 36.7\%. The phylogenetic tree showed that three species of Aquilaria formed one monophyletic clade with 100\% bootstrap value.",

keywords = "Aquilaria crassna Pierre ex Lecomte, chloroplast genome, critically endangered species, phylogenetic analysis",

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doi = "10.1080/23802359.2019.1613200",

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AU - Li, Guo Dong

AU - Rao, Pei Yu

AU - Guo, Jian Ling

AU - Zhang, Yong Hong

PY - 2019/1/2

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AB - Aquilaria crassna Pierre ex Lecomte is a principal agarwood tree resource. It has been listed as a critically endangered species. The complete chloroplast genome of A. crassna was assembled based on next-generation sequencing. The plastome was a quadripartite circular shape with 174,830 bp in length, including a large single-copy (LSC) region of 87,450 bp and small single-copy (SSC) region of 3346 bp, separated by two inverted repeat (IR) regions of 42,017 bp each. The chloroplast genome contained 125 genes, including 79 protein-coding genes, 38 tRNA genes, and 8 rRNA genes. The overall GC content of the whole genome was 36.7%. The phylogenetic tree showed that three species of Aquilaria formed one monophyletic clade with 100% bootstrap value.

KW - Aquilaria crassna Pierre ex Lecomte

KW - chloroplast genome

KW - critically endangered species

KW - phylogenetic analysis

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The complete chloroplast genome of a critically endangered agarwood tree, Aquilaria crassna (Thymelaeaceae)

Abstract

Keywords

ASJC Scopus subject areas

UN SDGs

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