The prokaryotic ubiquitin-like protein presents poor cleavage sites for proteasomal degradation

Erez Zerbib, Shai Schlussel, Nir Hecht, Noy Bagdadi, Jerry Eichler, Eyal Gur

Research output: Contribution to journalArticlepeer-review

Abstract

In an event reminiscent of eukaryotic ubiquitination, the bacterial prokaryotic ubiquitin-like protein (Pup)-proteasome system (PPS) marks target proteins for proteasomal degradation by covalently attaching Pup, the bacterial tagging molecule. Yet, ubiquitin is released from its conjugated target following proteasome binding, whereas Pup enters the proteasome and remains conjugated to the target. Here, we report that although Pup can be degraded by the bacterial proteasome, it lacks favorable 20S core particle (CP) cleavage sites and is thus a very poor 20S CP substrate. Reconstituting the PPS in vitro, we demonstrate that during pupylated protein degradation, Pup can escape unharmed and remain conjugated to a target-derived degradation fragment. Removal of this degradation fragment by Dop, a depupylase, facilitates Pup recycling and re-conjugation to a new target. This study thus offers a mechanistic model for Pup recycling and demonstrates how a lack of protein susceptibility to proteasome-mediated cleavage can play a mechanistic role in a biological system.

Original languageEnglish
Article number109428
JournalCell Reports
Volume36
Issue number4
DOIs
StatePublished - 27 Jul 2021

Keywords

  • AAA+
  • Dop
  • Mpa
  • Pup
  • proteasome
  • proteolysis

ASJC Scopus subject areas

  • Biochemistry, Genetics and Molecular Biology (all)

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