Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

Alexander Leitner; Alexandre M.J.J. Bonvin; Christoph H. Borchers; Robert J. Chalkley; Julia Chamot-Rooke; Colin W. Combe; Jürgen Cox; Meng Qiu Dong; Lutz Fischer; Michael Götze; Fabio C. Gozzo; Albert J.R. Heck; Michael R. Hoopmann; Lan Huang; Yasushi Ishihama; Andrew R. Jones; Nir Kalisman; Oliver Kohlbacher; Karl Mechtler; Robert L. Moritz; Eugen Netz; Petr Novak; Evgeniy Petrotchenko; Andrej Sali; Richard A. Scheltema; Carla Schmidt; David Schriemer; Andrea Sinz; Frank Sobott; Florian Stengel; Konstantinos Thalassinos; Henning Urlaub; Rosa Viner; Juan A. Vizcaíno; Marc R. Wilkins; Juri Rappsilber

doi:10.1016/j.str.2020.09.011

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

Alexander Leitner, Alexandre M.J.J. Bonvin, Christoph H. Borchers, Robert J. Chalkley, Julia Chamot-Rooke, Colin W. Combe, Jürgen Cox, Meng Qiu Dong, Lutz Fischer, Michael Götze, Fabio C. Gozzo, Albert J.R. Heck, Michael R. Hoopmann, Lan Huang, Yasushi Ishihama, Andrew R. Jones, Nir Kalisman, Oliver Kohlbacher, Karl Mechtler, Robert L. MoritzEugen Netz, Petr Novak, Evgeniy Petrotchenko, Andrej Sali, Richard A. Scheltema, Carla Schmidt, David Schriemer, Andrea Sinz, Frank Sobott, Florian Stengel, Konstantinos Thalassinos, Henning Urlaub, Rosa Viner, Juan A. Vizcaíno, Marc R. Wilkins, Juri Rappsilber

Research output: Contribution to journal › Article › peer-review

40 Scopus citations

Abstract

Cross-linking mass spectrometry (MS) has substantially matured as a method over the past 2 decades through parallel development in multiple labs, demonstrating its applicability to protein structure determination, conformation analysis, and mapping protein interactions in complex mixtures. Cross-linking MS has become a much-appreciated and routinely applied tool, especially in structural biology. Therefore, it is timely that the community commits to the development of methodological and reporting standards. This white paper builds on an open process comprising a number of events at community conferences since 2015 and identifies aspects of Cross-linking MS for which guidelines should be developed as part of a Cross-linking MS standards initiative.

Original language	English
Pages (from-to)	1259-1268
Number of pages	10
Journal	Structure
Volume	28
Issue number	11
DOIs	https://doi.org/10.1016/j.str.2020.09.011
State	Published - 3 Nov 2020
Externally published	Yes

ASJC Scopus subject areas

Structural Biology
Molecular Biology

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Leitner, A., Bonvin, A. M. J. J., Borchers, C. H., Chalkley, R. J., Chamot-Rooke, J., Combe, C. W., Cox, J., Dong, M. Q., Fischer, L., Götze, M., Gozzo, F. C., Heck, A. J. R., Hoopmann, M. R., Huang, L., Ishihama, Y., Jones, A. R., Kalisman, N., Kohlbacher, O., Mechtler, K., ... Rappsilber, J. (2020). Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry. Structure, 28(11), 1259-1268. https://doi.org/10.1016/j.str.2020.09.011

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title = "Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry",

abstract = "Cross-linking mass spectrometry (MS) has substantially matured as a method over the past 2 decades through parallel development in multiple labs, demonstrating its applicability to protein structure determination, conformation analysis, and mapping protein interactions in complex mixtures. Cross-linking MS has become a much-appreciated and routinely applied tool, especially in structural biology. Therefore, it is timely that the community commits to the development of methodological and reporting standards. This white paper builds on an open process comprising a number of events at community conferences since 2015 and identifies aspects of Cross-linking MS for which guidelines should be developed as part of a Cross-linking MS standards initiative.",

author = "Alexander Leitner and Bonvin, {Alexandre M.J.J.} and Borchers, {Christoph H.} and Chalkley, {Robert J.} and Julia Chamot-Rooke and Combe, {Colin W.} and J{\"u}rgen Cox and Dong, {Meng Qiu} and Lutz Fischer and Michael G{\"o}tze and Gozzo, {Fabio C.} and Heck, {Albert J.R.} and Hoopmann, {Michael R.} and Lan Huang and Yasushi Ishihama and Jones, {Andrew R.} and Nir Kalisman and Oliver Kohlbacher and Karl Mechtler and Moritz, {Robert L.} and Eugen Netz and Petr Novak and Evgeniy Petrotchenko and Andrej Sali and Scheltema, {Richard A.} and Carla Schmidt and David Schriemer and Andrea Sinz and Frank Sobott and Florian Stengel and Konstantinos Thalassinos and Henning Urlaub and Rosa Viner and Vizca{\'i}no, {Juan A.} and Wilkins, {Marc R.} and Juri Rappsilber",

note = "Publisher Copyright: {\textcopyright} 2020",

year = "2020",

month = nov,

day = "3",

doi = "10.1016/j.str.2020.09.011",

language = "English",

volume = "28",

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Leitner, A, Bonvin, AMJJ, Borchers, CH, Chalkley, RJ, Chamot-Rooke, J, Combe, CW, Cox, J, Dong, MQ, Fischer, L, Götze, M, Gozzo, FC, Heck, AJR, Hoopmann, MR, Huang, L, Ishihama, Y, Jones, AR, Kalisman, N, Kohlbacher, O, Mechtler, K, Moritz, RL, Netz, E, Novak, P, Petrotchenko, E, Sali, A, Scheltema, RA, Schmidt, C, Schriemer, D, Sinz, A, Sobott, F, Stengel, F, Thalassinos, K, Urlaub, H, Viner, R, Vizcaíno, JA, Wilkins, MR & Rappsilber, J 2020, 'Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry', Structure, vol. 28, no. 11, pp. 1259-1268. https://doi.org/10.1016/j.str.2020.09.011

TY - JOUR

T1 - Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

AU - Leitner, Alexander

AU - Bonvin, Alexandre M.J.J.

AU - Borchers, Christoph H.

AU - Chalkley, Robert J.

AU - Chamot-Rooke, Julia

AU - Combe, Colin W.

AU - Cox, Jürgen

AU - Dong, Meng Qiu

AU - Fischer, Lutz

AU - Götze, Michael

AU - Gozzo, Fabio C.

AU - Heck, Albert J.R.

AU - Hoopmann, Michael R.

AU - Huang, Lan

AU - Ishihama, Yasushi

AU - Jones, Andrew R.

AU - Kalisman, Nir

AU - Kohlbacher, Oliver

AU - Mechtler, Karl

AU - Moritz, Robert L.

AU - Netz, Eugen

AU - Novak, Petr

AU - Petrotchenko, Evgeniy

AU - Sali, Andrej

AU - Scheltema, Richard A.

AU - Schmidt, Carla

AU - Schriemer, David

AU - Sinz, Andrea

AU - Sobott, Frank

AU - Stengel, Florian

AU - Thalassinos, Konstantinos

AU - Urlaub, Henning

AU - Viner, Rosa

AU - Vizcaíno, Juan A.

AU - Wilkins, Marc R.

AU - Rappsilber, Juri

PY - 2020/11/3

Y1 - 2020/11/3

N2 - Cross-linking mass spectrometry (MS) has substantially matured as a method over the past 2 decades through parallel development in multiple labs, demonstrating its applicability to protein structure determination, conformation analysis, and mapping protein interactions in complex mixtures. Cross-linking MS has become a much-appreciated and routinely applied tool, especially in structural biology. Therefore, it is timely that the community commits to the development of methodological and reporting standards. This white paper builds on an open process comprising a number of events at community conferences since 2015 and identifies aspects of Cross-linking MS for which guidelines should be developed as part of a Cross-linking MS standards initiative.

AB - Cross-linking mass spectrometry (MS) has substantially matured as a method over the past 2 decades through parallel development in multiple labs, demonstrating its applicability to protein structure determination, conformation analysis, and mapping protein interactions in complex mixtures. Cross-linking MS has become a much-appreciated and routinely applied tool, especially in structural biology. Therefore, it is timely that the community commits to the development of methodological and reporting standards. This white paper builds on an open process comprising a number of events at community conferences since 2015 and identifies aspects of Cross-linking MS for which guidelines should be developed as part of a Cross-linking MS standards initiative.

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U2 - 10.1016/j.str.2020.09.011

DO - 10.1016/j.str.2020.09.011

M3 - Article

C2 - 33065067

AN - SCOPUS:85094323825

SN - 0969-2126

VL - 28

SP - 1259

EP - 1268

JO - Structure

JF - Structure

IS - 11

ER -

Toward Increased Reliability, Transparency, and Accessibility in Cross-linking Mass Spectrometry

Abstract

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