Unfolding of I91 protein under constant force follows continuous time random walk sub-diffusive dynamics

E Chetrit, Y Meroz, R Berkovich

Research output: Contribution to conferenceAbstract

Abstract

Using large statistics, unfolding of ubiquitin under constant force displayed nonexponential dwell-time distribution, which was explained in terms of a form of glassy transition between the folded and unfolded states. This means that the unfolding process occurs over a distribution of activation barriers, and thus can be best described as a disordered process, and characterized with a stretched exponential (Weibull) distribution. Considering unfolding as a diffusion driven process over an activation barrier, we studied protein unfolding under constant force by attaining the timeaveraged mean square displacements (TA-MSD) of the unfolding dwell time distributions within the framework of continuous time random walks (CTRW). To this end, we measured the unfolding dwell-time distributions of I91 protein using atomic force microscopy under a constant force of 180 pN, which similarly to ubiquitin exhibited nonexponential unfolding behavior. According to the CTRW approach, unfolding can be represented by a joint probability density function P(x,t) that can describe the transition over several length or time scales. Using asymptotic algebraic (power-law) decay with a long time behavior of the form ~t –α–1 proves to be more suitable to describe the observed dwell-time distribution. The TA-MSDs alluded to weak ergodicity breaking, and a long-tail power-law dependency of the unfolding dwell-time distributions with an exponent of α ~ 0.85, with a cutoff set by experimental limitation.

Conference

ConferenceJOINT 12th EBSA congress and 10th ICBP – IUPAP congress
Country/TerritorySpain
CityMadrid
Period20/07/1924/07/19
Internet address

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